Motaz AlqaoudPh.D.
Senior AI/ML Engineer · Abbott

Motaz AlqaoudPh.D.

AI, engineered for healthcare.

Most medical AI never leaves the paper it was published in. I build the systems that do, closing the gap between what a model can do in research and what it actually changes at the bedside, turning models into systems clinicians trust and patients benefit from.

I Overview
My vision

Care first. Technology in service of it.

The most capable model in the world means nothing if it never reaches a patient.

I sit at the intersection of engineering and medicine, turning powerful models into care that’s real, safe, and trusted.

The mission

Close the research-to-practice gap

Most medical AI stalls in papers and demos. I take on the harder work: turning it into systems clinicians actually rely on, not just cite.

The patient

People before parameters

Every design decision traces back to one person waiting on an answer. Safety and clarity always come first, no exceptions.

The discipline

Built for the real world

Regulatory constraints and clinical validation aren’t bolted on at the end. They’re design inputs from line one of code.

The foundation

Engineering into medicine

Three degrees in biomedical engineering taught me to carry an idea from concept to a system people can actually depend on.

II Projects
Selected work

Projects

Open-source work spanning the AI stack, from deployed models to systems in active development. Each is a standalone repository.

01

brain-tumor-segmentation

A 3D Attention U-Net segmenting brain tumors from MRI across multiple classes, trained end-to-end, with a live demo running on Hugging Face.

View repository ↗
02

Clinical RAG Assistant

RAG over clinical documents, built so dosages and lab values survive retrieval intact. That’s the exact failure mode that breaks naive RAG in medicine.

View repository ↗
See all repositories on GitHub →
III Crafts
Disciplines & skills

Crafts

Core competencies across medical imaging, simulation, and regulated AI deployment, each one earning its place in a clinical system.

01

Surgical Navigation

MRI-to-ultrasound registration and biomechanical modeling, built to survive an actual OR, not just a benchmark.

02

Medical Imaging & Deep Learning

Segmentation, registration, and full 3D pipelines: MRI, CT, ultrasound, whatever the modality demands.

03

RAG & LLM Agents

Retrieval and multi-agent orchestration for clinical knowledge, where a wrong answer isn’t bad UX. It’s a risk.

04

GNNs & Physics-Informed AI

Graph learning constrained by physical law, anatomy and tissue modeled as structure, not flat features.

05

Simulation & FEA

Finite-element tissue deformation for surgical planning, and physics-accurate synthetic data when real data can’t scale.

06

Classical ML, RL & MLOps

Production pipelines, reinforcement learning for sequential decisions, and deployment that survives FDA scrutiny.

07

NLP & Signal Processing

Clinical NLP for EHR text, and biosignal processing built for the noise profile of real medical devices.

08

Medical Device Regulation

FDA SaMD pathways, 510(k)/PMA awareness, and clinical validation for AI that ships as a device, not a demo.

09

Calibration & Validation

Sensor and system calibration, accuracy testing, and uncertainty quantification. It’s the discipline behind that 4.6 mm number.

Tools & technical skills

AI / ML

Python, PyTorch, TensorFlow, CNNs, GNNs, RNNs, Transformers & Attention, Random Forests, Gradient Boosting (XGBoost), SVM, Bayesian Methods, Reinforcement Learning, Generative AI, LLM & Agentic AI, RAG Engineering, LangChain, Vector Databases, Prompt Engineering, Fine-Tuning & Quantization, NLP, HPC, CUDA

MLOps & Cloud

DevOps / DataOps / MLOps, Azure ML, Azure Databricks, AWS SageMaker, GCP Vertex AI, Docker, Kubernetes, Terraform, CI/CD, MLflow, Airflow, Model Monitoring, Feature Stores, Data Engineering, Microservices

Medical Imaging

Segmentation, Registration, DICOM, NIfTI, MINC, MRI 3D, Ultrasound, 3D Slicer, MONAI, ITK/VTK, PLUS Toolkit, Radiomics, Multi-Modal Fusion

Simulation & CAD

Abaqus, ANSYS, FEA, Digital Twins, CGAL, Blender, MeshLab, Patient-Specific Meshing, 3D Printing

Image-Guided Surgery

Surgical Planning, Surgical Tracking, Optical & Electromagnetic Tracking, Intraoperative Imaging, Registration Accuracy Assessment, Image-Guided Therapy, Soft-Tissue Modeling

Methods & Dev

Git & Version Control, Agile / Scrum, JIRA, MS Visual Studio, CMake, DOE, ANOVA, Minitab, LabVIEW

Regulatory & Compliance

FDA Submissions, SaMD, 510(k), Biocompatibility, EU MDR/IVDR, HIPAA, GDPR, Clinical Validation, AI in MedTech

Collaboration & Productivity

MS Word / Excel / PowerPoint, Visio, EndNote, Teams, SharePoint, Slack, Google Workspace

Certifications & continuing education

Ongoing coursework to stay current across the fast-moving parts of the AI stack, from agentic systems to cloud MLOps.

University of Alberta & Amii · Coursera

Reinforcement Learning Specialization

Four-course sequence: Fundamentals of RL, Sample-based Learning Methods, Prediction & Control with Function Approximation, and a capstone building a complete RL system.

DeepLearning.AI

AI for Medical Diagnosis

Built CNN models for image classification and segmentation to diagnose lung and brain disorders from medical scans.

DeepLearning.AI

TensorFlow Developer Professional Certificate

Introduction to TensorFlow, CNNs in TensorFlow, and NLP in TensorFlow, building scalable models for image and text data.

IBM

Develop Generative AI Applications: Get Started

Foundations of building applications on top of generative AI models.

Microsoft

AI Agent Fundamentals with Azure AI Foundry

Designing and deploying autonomous AI agents on Microsoft’s Azure AI Foundry platform.

Microsoft

Foundations of AI & ML · Azure ML Pipelines · Azure Databricks

End-to-end model pipelines and data science workflows on Azure’s cloud ML stack.

Duke University

DevOps, DataOps, MLOps

Production practices for shipping and maintaining ML systems reliably at scale.

Whizlabs

Data Engineering in AWS

Data gathering, missing-data handling, feature extraction and selection using PCA and variance thresholds.

Packt

Advanced Machine Learning and Deep Learning

Deeper architectures and training techniques beyond introductory ML.

University of Michigan · 28DIGITAL

Digital Twins · Mastering Digital Twins

Building virtual representations of physical systems for simulation-driven design and monitoring.

Coursera

Innovate with ANSYS Simulation Tools

Applied simulation workflows using the ANSYS platform.

O.P. Jindal Global University

Machine Learning

Core ML theory and applied methods.

IV Conferences
Speaking & presence

Conferences & professional events

Academic conferences from my Ph.D. research, each resulting in a peer-reviewed publication, alongside recent industry events tracking where AI, simulation, and medical-device regulation are heading.

Jul 2022
IEEE EMBC (44th Annual Intl. Conference of the IEEE Engineering in Medicine & Biology Society)Glasgow, Scotland. Presented nnU-Net-based multi-modality breast MRI segmentation research.
Academic
Jul 2022
ANNSIM (Annual Modeling and Simulation Conference)San Diego, CA. Presented preoperative planning work for robotic breast surgery navigation. Best Paper, Medical Track.
Academic
May 2023
ANNSIM (Annual Modeling and Simulation Conference)Hamilton, Ontario, Canada. Presented controlled-resolution breast meshing for FE-based surgical simulation.
Academic
May 2025
ANNSIM (Annual Modeling and Simulation Conference)Complutense University of Madrid, Spain. Presented a deep-learning framework for breast cancer surgical navigation with intra-operative imaging.
Academic
Oct 2025
Current Applications and Future of AI in Cardiology (Mayo Clinic)Napa, CA. CME course covering generative AI, predictive modeling, and clinical decision support in cardiology.
Clinical
Feb 2026
World Agentic AI Summit (Luxatia International)Berlin, Germany. Two-day executive summit on autonomous AI systems, multi-agent architectures, and enterprise AI governance.
Industry
May 2026
Simulation World Central (ANSYS)Minneapolis, MN. Industry event on advanced simulation across healthcare, automotive, and aerospace applications.
Industry
Jun 2026
RAPS Twin Cities (MN Medical Devices Essentials)Medtronic Headquarters, Minneapolis, MN. Full-day regulatory symposium covering FDA submissions, biocompatibility, AI in MedTech, and EU MDR/IVDR.
Regulatory
Aug 2026
Ai4 2026The Venetian, Las Vegas, NV. North America’s largest AI conference, with keynotes and tracks spanning enterprise AI, agentic systems, and healthcare applications.
Industry
V Background
Who I am

Background

Motaz Alqaoud

I’m a biomedical engineer with a Ph.D., now Senior AI/ML Engineer at Abbott, building AI and machine learning for medical imaging and healthcare at a company that ships to actual patients.

My doctoral research built a real-time, image-guided navigation system for breast cancer surgery: deep learning, patient-specific modeling, and biomechanical simulation combined in one framework, reaching 4.6 mm tumor localization accuracy, developed alongside clinical teams from diagnosis through treatment planning.

Three degrees across Cairo, Connecticut, and Virginia, and hands-on work in medical imaging, biomechanics, bioelectric engineering, and drug delivery. That breadth is exactly what lets me move research into clinical practice instead of leaving it in a paper.

Today that foundation goes into Abbott’s product lines: AI built to support real patient care, not just a research paper.

NOW
Senior AI/ML Engineer · AbbottBuilding applied AI and machine learning for healthcare.
2024
Ph.D., Biomedical EngineeringOld Dominion University, Norfolk, VA. Dissertation on real-time navigation for breast cancer surgery using neural networks. Advisor: Michel Audette, Ph.D.
2019
M.S., Biomedical EngineeringUniversity of New Haven, West Haven, CT.
2014
B.E., Biomedical & Systems EngineeringCairo University, Giza, Egypt.
VI Publications
Research

Publications

Peer-reviewed conference work in medical imaging, breast MRI segmentation, and finite-element surgical simulation.

IEEE EMBC 2022

nnU-Net-based Multi-modality Breast MRI Segmentation and Tissue-Delineating Phantom for Robotic Tumor Surgery Planning

M. Alqaoud, J. Plemmons, E. Feliberti, S. Dong, K. Kaipa, G. Fichtinger, Y. Xiao, M. A. Audette

TLDR: A deep-learning pipeline segmenting multi-modality breast MRI with nnU-Net, paired with a tissue-delineating phantom, to support planning for robotic tumor surgery.

View on IEEE Xplore ↗
ANNSIM 2022

Multi-Modality Breast MRI Segmentation Using nnU-Net for Preoperative Planning of Robotic Surgery Navigation

M. Alqaoud, J. Plemmons, E. Feliberti, K. Kaipa, S. Dong, G. Fichtinger, Y. Xiao, M. A. Audette

TLDR: Extends multi-modality breast MRI segmentation to preoperative planning for robotic surgical navigation. Best Paper, Medical Track.

View on IEEE Xplore ↗
ANNSIM 2023

Multi-Material, Approach-Guided, Controlled-Resolution Breast Meshing for FE-Based Interactive Surgery Simulation

M. Alqaoud, J. Plemmons, E. Feliberti, K. Kaipa, G. Fichtinger, Y. Xiao, T. Rashid, M. A. Audette

TLDR: A controlled-resolution, multi-material breast meshing method enabling finite-element-based interactive surgical simulation guided by the surgical approach.

View on IEEE Xplore ↗
ANNSIM 2025

Simulation of Breast Deformation Due to US Probe

M. Alqaoud, M. A. Audette, et al.

TLDR: A biomechanical simulation modeling breast tissue deformation caused by ultrasound probe pressure, improving the accuracy of MRI-to-ultrasound registration for surgical navigation. Presented at ANNSIM 2025, Madrid, Spain.

View on IEEE Xplore ↗
Ph.D. Dissertation · ODU 2024

Real-Time Navigation System for Breast Cancer Surgery with Pre- and Intra-Operative Imaging Using Neural Networks

Motaz Alqaoud · Old Dominion University

TLDR: The full doctoral dissertation: an end-to-end AI-driven navigation system integrating deep learning, patient-specific modeling, and biomechanical simulation for breast cancer surgery, achieving 4.6 mm tumor localization.

View on ODU Digital Commons ↗
VII Contact

Reach out.

I’m always glad to hear from people working on AI in healthcare, potential collaborators, or anyone with a sharp question about the work above.